Variant report

Variant	rs36072295
Chromosome Location	chr4:93976578-93976579
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11097359	0.83[AFR][1000 genomes]
rs11097360	0.83[AFR][1000 genomes]
rs11936859	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12643508	0.92[EUR][1000 genomes]
rs12645241	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12646815	0.84[AFR][1000 genomes]
rs12648623	1.00[EUR][1000 genomes]
rs12648848	0.82[AFR][1000 genomes]
rs1902436	1.00[EUR][1000 genomes]
rs55775839	0.83[AFR][1000 genomes]
rs56019979	0.83[AFR][1000 genomes]
rs56119934	0.80[AFR][1000 genomes]
rs62308220	0.80[AFR][1000 genomes]
rs62308221	0.83[AFR][1000 genomes]
rs62308222	0.80[AFR][1000 genomes]
rs62308251	0.80[AFR][1000 genomes]
rs62308252	0.80[AFR][1000 genomes]
rs62308254	0.86[AFR][1000 genomes]
rs6833069	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6836612	1.00[EUR][1000 genomes]
rs72665301	0.80[AFR][1000 genomes]
rs72666919	0.85[AFR][1000 genomes]
rs72885778	0.92[EUR][1000 genomes]
rs72885784	0.92[EUR][1000 genomes]
rs7667251	1.00[EUR][1000 genomes]
rs7683817	0.90[AFR][1000 genomes]
rs977954	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916371	chr4:93673026-93994807	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv879611	chr4:93707288-93987251	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv997640	chr4:93790604-93982695	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879614	chr4:93869564-93989892	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv931937	chr4:93869856-94155348	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1011740	chr4:93904073-94073963	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3374790	chr4:93959718-94063251	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1797112	chr4:93974179-93993208	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:93973200-93977200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:93974400-93988000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:93976000-93979600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:93976200-93976600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:93976400-93977200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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