Variant report

Variant	rs12646815
Chromosome Location	chr4:94019909-94019910
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11097359	0.96[AFR][1000 genomes]
rs11097360	0.96[AFR][1000 genomes]
rs11932840	0.88[AFR][1000 genomes]
rs11936792	0.88[AFR][1000 genomes]
rs11936859	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11939788	0.91[AFR][1000 genomes]
rs11939921	0.91[AFR][1000 genomes]
rs11945891	0.88[AFR][1000 genomes]
rs12643508	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12648848	0.95[AFR][1000 genomes]
rs12650929	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17020188	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36072295	0.84[AFR][1000 genomes]
rs55775839	0.96[AFR][1000 genomes]
rs56019979	0.96[AFR][1000 genomes]
rs56119934	0.93[AFR][1000 genomes]
rs62308218	0.88[AFR][1000 genomes]
rs62308220	0.93[AFR][1000 genomes]
rs62308221	0.96[AFR][1000 genomes]
rs62308222	0.93[AFR][1000 genomes]
rs62308251	0.93[AFR][1000 genomes]
rs62308252	0.93[AFR][1000 genomes]
rs62308253	0.81[AFR][1000 genomes]
rs62308254	0.86[AFR][1000 genomes]
rs62308256	0.88[AFR][1000 genomes]
rs6821061	0.88[AFR][1000 genomes]
rs72665288	0.91[AFR][1000 genomes]
rs72665301	0.93[AFR][1000 genomes]
rs72666908	0.89[AFR][1000 genomes]
rs72666919	0.84[AFR][1000 genomes]
rs72885778	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72885784	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72887624	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72887644	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7437416	0.88[AFR][1000 genomes]
rs7669480	0.91[AFR][1000 genomes]
rs7683817	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs977954	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv931937	chr4:93869856-94155348	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1011740	chr4:93904073-94073963	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3374790	chr4:93959718-94063251	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv999660	chr4:93982635-94107714	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94008000-94037400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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