Variant report

Variant	rs11939234
Chromosome Location	chr4:81970644-81970645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11930027	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11939377	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11944997	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61729824	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6812375	1.00[AMR][1000 genomes]
rs6816692	1.00[AMR][1000 genomes]
rs73831284	1.00[AMR][1000 genomes]
rs7676769	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7680476	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7681772	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1006466	chr4:81888983-82009675	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81955000-81973400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:81960400-81973400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:81961200-81971000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr4:81961400-81973200	Weak transcription	Primary B cells from cord blood	blood
5	chr4:81961600-81973400	Weak transcription	Fetal Intestine Small	intestine
6	chr4:81967600-81973400	Weak transcription	Fetal Intestine Large	intestine
7	chr4:81967800-81970800	Weak transcription	Fetal Stomach	stomach
8	chr4:81968400-81971200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr4:81968400-81973400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr4:81969400-81973800	Enhancers	Rectal Smooth Muscle	rectum
11	chr4:81970000-81971600	Enhancers	Ovary	ovary
12	chr4:81970200-81971200	Active TSS	Stomach Smooth Muscle	stomach
13	chr4:81970400-81971400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:81970400-81971400	Enhancers	Fetal Lung	lung
15	chr4:81970600-81971000	Flanking Active TSS	Colon Smooth Muscle	Colon
16	chr4:81970600-81971800	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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