Variant report

Variant	rs61729824
Chromosome Location	chr4:81952658-81952659
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11930027	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11939234	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11939377	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11944997	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6812375	1.00[AMR][1000 genomes]
rs6816692	1.00[AMR][1000 genomes]
rs73831284	1.00[AMR][1000 genomes]
rs7676769	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7680476	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7681772	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1006466	chr4:81888983-82009675	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81951000-81953000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr4:81951000-81953400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
3	chr4:81951000-81953400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
4	chr4:81951000-81954800	Active TSS	Duodenum Mucosa	Duodenum
5	chr4:81951200-81952800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:81951200-81953000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:81951200-81953000	Bivalent Enhancer	Liver	Liver
8	chr4:81951200-81953200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
9	chr4:81951200-81953200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:81951200-81953400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr4:81951200-81953400	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:81951200-81953400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
13	chr4:81951200-81953600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
14	chr4:81951200-81953600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
15	chr4:81951200-81953600	Flanking Active TSS	Primary B cells from cord blood	blood
16	chr4:81951200-81953600	Bivalent/Poised TSS	Fetal Kidney	kidney
17	chr4:81951200-81954200	Active TSS	Ovary	ovary
18	chr4:81951200-81955400	Active TSS	Rectal Smooth Muscle	rectum
19	chr4:81951400-81952800	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:81951400-81952800	Bivalent/Poised TSS	Brain Anterior Caudate	brain
21	chr4:81951400-81953000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr4:81951400-81953200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr4:81951400-81953200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
24	chr4:81951400-81953400	Bivalent/Poised TSS	Fetal Intestine Large	intestine
25	chr4:81951400-81953600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
26	chr4:81951600-81952800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr4:81951600-81952800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
28	chr4:81951600-81952800	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
29	chr4:81951600-81952800	Bivalent/Poised TSS	Osteobl	bone
30	chr4:81951600-81953000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr4:81951600-81953000	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
32	chr4:81951600-81953000	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
33	chr4:81951800-81952800	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr4:81951800-81952800	Bivalent/Poised TSS	Esophagus	oesophagus
35	chr4:81951800-81952800	Bivalent/Poised TSS	Psoas Muscle	Psoas
36	chr4:81951800-81952800	Active TSS	Rectal Mucosa Donor 29	rectum
37	chr4:81951800-81953000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr4:81951800-81953000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
39	chr4:81951800-81953000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
40	chr4:81951800-81954200	Bivalent/Poised TSS	Fetal Lung	lung
41	chr4:81952000-81952800	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
42	chr4:81952000-81952800	Enhancers	Fetal Heart	heart
43	chr4:81952000-81952800	Active TSS	Gastric	stomach
44	chr4:81952000-81952800	Bivalent/Poised TSS	Sigmoid Colon	Sigmoid Colon
45	chr4:81952000-81952800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
46	chr4:81952000-81953000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr4:81952000-81953000	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
48	chr4:81952000-81953000	Bivalent Enhancer	Placenta	Placenta
49	chr4:81952000-81953200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr4:81952000-81953400	Bivalent Enhancer	Fetal Brain Male	brain

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