Variant report

Variant	rs7680476
Chromosome Location	chr4:81953457-81953458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11930027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11939234	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11939377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11944997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61729824	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6812375	1.00[AMR][1000 genomes]
rs6816692	1.00[AMR][1000 genomes]
rs73831284	1.00[AMR][1000 genomes]
rs7676769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7681772	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1006466	chr4:81888983-82009675	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81951000-81954800	Active TSS	Duodenum Mucosa	Duodenum
2	chr4:81951200-81953600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
3	chr4:81951200-81953600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
4	chr4:81951200-81953600	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr4:81951200-81953600	Bivalent/Poised TSS	Fetal Kidney	kidney
6	chr4:81951200-81954200	Active TSS	Ovary	ovary
7	chr4:81951200-81955400	Active TSS	Rectal Smooth Muscle	rectum
8	chr4:81951400-81953600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
9	chr4:81951800-81954200	Bivalent/Poised TSS	Fetal Lung	lung
10	chr4:81952200-81953600	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
11	chr4:81953000-81953600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
12	chr4:81953000-81953600	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr4:81953200-81953600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:81953200-81953600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr4:81953200-81953600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
16	chr4:81953200-81954000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
17	chr4:81953200-81954800	Active TSS	Rectal Mucosa Donor 29	rectum
18	chr4:81953200-81955200	Bivalent/Poised TSS	Fetal Brain Female	brain
19	chr4:81953200-81955400	Active TSS	Fetal Stomach	stomach
20	chr4:81953200-81956200	Active TSS	Stomach Smooth Muscle	stomach
21	chr4:81953400-81953600	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr4:81953400-81953600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
23	chr4:81953400-81953600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
24	chr4:81953400-81953600	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
25	chr4:81953400-81953800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
26	chr4:81953400-81953800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
27	chr4:81953400-81954000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
28	chr4:81953400-81954000	Flanking Active TSS	Fetal Intestine Large	intestine
29	chr4:81953400-81954800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr4:81953400-81954800	Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr4:81953400-81955400	Active TSS	Brain Germinal Matrix	brain

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