Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10030913	0.89[EUR][1000 genomes]
rs10866440	0.89[EUR][1000 genomes]
rs11730525	0.90[EUR][1000 genomes]
rs11734953	0.86[EUR][1000 genomes]
rs11933908	0.90[EUR][1000 genomes]
rs12500454	0.80[EUR][1000 genomes]
rs13108245	0.87[EUR][1000 genomes]
rs13113802	0.87[EUR][1000 genomes]
rs13146960	0.85[EUR][1000 genomes]
rs13149162	0.91[EUR][1000 genomes]
rs1877669	0.91[EUR][1000 genomes]
rs2090962	0.92[EUR][1000 genomes]
rs3000	0.90[EUR][1000 genomes]
rs4864607	0.88[EUR][1000 genomes]
rs6554397	0.89[EUR][1000 genomes]
rs6554398	0.88[EUR][1000 genomes]
rs6838948	0.90[EUR][1000 genomes]
rs6854420	0.91[EUR][1000 genomes]
rs6855212	0.94[EUR][1000 genomes]
rs7666804	0.90[EUR][1000 genomes]
rs7667302	0.90[EUR][1000 genomes]
rs7667744	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7695970	0.91[EUR][1000 genomes]
rs899630	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs899631	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs899632	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57761600-57773000	Weak transcription	Right Atrium	heart

Quick Search: