Variant report

Variant	rs899631
Chromosome Location	chr4:57749363-57749364
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10030913	0.89[EUR][1000 genomes]
rs10866440	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10866441	1.00[CEU][hapmap]
rs1105434	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11730525	0.90[EUR][1000 genomes]
rs11734953	0.86[EUR][1000 genomes]
rs11736869	0.96[CEU][hapmap]
rs11933908	0.90[EUR][1000 genomes]
rs11941568	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12500454	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs13108245	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs13113802	0.88[EUR][1000 genomes]
rs13146960	0.85[EUR][1000 genomes]
rs13149162	0.91[EUR][1000 genomes]
rs1877669	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2090962	0.93[EUR][1000 genomes]
rs2170073	0.81[AMR][1000 genomes]
rs2170074	0.81[AMR][1000 genomes]
rs2412772	0.96[CEU][hapmap];0.86[CHB][hapmap]
rs3000	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4339274	0.82[CEU][hapmap];0.81[AMR][1000 genomes]
rs4371672	0.81[AMR][1000 genomes]
rs4616820	0.81[AMR][1000 genomes]
rs4864607	0.88[EUR][1000 genomes]
rs4864608	0.80[EUR][1000 genomes]
rs4865172	0.88[CEU][hapmap]
rs6554397	0.89[EUR][1000 genomes]
rs6554398	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6838948	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6852110	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs6854420	0.91[EUR][1000 genomes]
rs6855212	0.95[EUR][1000 genomes]
rs7666804	0.98[EUR][1000 genomes]
rs7667302	0.98[EUR][1000 genomes]
rs7667744	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7670313	0.81[AMR][1000 genomes]
rs7680140	0.82[CEU][hapmap]
rs7680734	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs7695970	0.91[EUR][1000 genomes]
rs899630	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs899632	0.98[EUR][1000 genomes]
rs9685436	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv523211	chr4:57749080-57761417	Enhancers Active TSS Flanking Active TSS Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57741400-57750800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:57749000-57750600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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