Variant report

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10030913	0.89[EUR][1000 genomes]
rs10866440	0.89[EUR][1000 genomes]
rs1105434	0.80[EUR][1000 genomes]
rs11730525	0.90[EUR][1000 genomes]
rs11734953	0.86[EUR][1000 genomes]
rs11933908	0.90[EUR][1000 genomes]
rs11941568	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12500454	0.81[EUR][1000 genomes]
rs13108245	0.88[EUR][1000 genomes]
rs13113802	0.88[EUR][1000 genomes]
rs13146960	0.85[EUR][1000 genomes]
rs13149162	0.91[EUR][1000 genomes]
rs1877669	0.92[EUR][1000 genomes]
rs2090962	0.93[EUR][1000 genomes]
rs2170073	0.80[AMR][1000 genomes]
rs2170074	0.80[AMR][1000 genomes]
rs3000	0.90[EUR][1000 genomes]
rs4339274	0.80[AMR][1000 genomes]
rs4371672	0.80[AMR][1000 genomes]
rs4616820	0.80[AMR][1000 genomes]
rs4864607	0.88[EUR][1000 genomes]
rs4864608	0.80[EUR][1000 genomes]
rs6554397	0.89[EUR][1000 genomes]
rs6554398	0.88[EUR][1000 genomes]
rs6838948	0.90[EUR][1000 genomes]
rs6852110	0.80[EUR][1000 genomes]
rs6854420	0.91[EUR][1000 genomes]
rs6855212	0.95[EUR][1000 genomes]
rs7666804	0.98[EUR][1000 genomes]
rs7667302	0.98[EUR][1000 genomes]
rs7670313	0.80[AMR][1000 genomes]
rs7680734	0.80[EUR][1000 genomes]
rs7695970	0.91[EUR][1000 genomes]
rs899630	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs899631	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs899632	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv523211	chr4:57749080-57761417	Enhancers Active TSS Flanking Active TSS Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57741400-57750800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:57750600-57750800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:57750600-57750800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:57750600-57750800	Enhancers	Pancreas	Pancrea
5	chr4:57750600-57751000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:57750600-57751000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:57750600-57751000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:57750600-57751200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr4:57750600-57751200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr4:57750600-57751200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:57750600-57751200	Enhancers	Esophagus	oesophagus
12	chr4:57750600-57751400	Enhancers	Fetal Thymus	thymus

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