Variant report

Variant	rs11941969
Chromosome Location	chr4:59418824-59418825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10517441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11133574	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11934348	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11938920	0.92[ASN][1000 genomes]
rs11943628	0.92[ASN][1000 genomes]
rs12108627	0.92[ASN][1000 genomes]
rs1605774	0.83[ASN][1000 genomes]
rs17218287	0.84[ASN][1000 genomes]
rs55957721	0.92[ASN][1000 genomes]
rs56099606	0.92[ASN][1000 genomes]
rs61193870	0.84[ASN][1000 genomes]
rs73819264	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73819288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73819291	0.97[ASN][1000 genomes]
rs73819297	0.92[ASN][1000 genomes]
rs73819301	0.84[ASN][1000 genomes]
rs7658382	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762438	chr4:58712109-59441414	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1011418	chr4:59081528-59674340	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv879030	chr4:59379696-59548868	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:59418000-59419200	Enhancers	Placenta	Placenta
2	chr4:59418000-59420000	Enhancers	H9 Cell Line	embryonic stem cell
3	chr4:59418600-59419200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:59418800-59419000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:59418800-59419400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:59418800-59420200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:59418800-59420800	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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