Variant report

Variant	rs73819291
Chromosome Location	chr4:59432660-59432661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10517441	0.97[ASN][1000 genomes]
rs11133574	0.93[ASN][1000 genomes]
rs11934348	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11938920	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11941969	0.97[ASN][1000 genomes]
rs11943628	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12108627	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1605774	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17218287	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55957721	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56099606	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61193870	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73819264	0.92[ASN][1000 genomes]
rs73819288	0.97[ASN][1000 genomes]
rs73819297	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73819301	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7658382	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762438	chr4:58712109-59441414	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1011418	chr4:59081528-59674340	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv879030	chr4:59379696-59548868	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3467877	chr4:59428864-59435643	Enhancers Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	n/a
5	esv3467878	chr4:59428917-59435608	Weak transcription Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	n/a
6	esv2810	chr4:59428963-59435592	Enhancers Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	n/a
7	esv3467876	chr4:59428982-59435543	Enhancers Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	n/a
8	esv3467879	chr4:59428996-59435543	Enhancers Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:59432000-59433800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:59432200-59433000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:59432200-59433000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr4:59432200-59433000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:59432400-59432800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:59432400-59433000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr4:59432400-59433000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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