Variant report
| Variant | rs73819264 |
|---|---|
| Chromosome Location | chr4:59390762-59390763 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:3)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-IGFBP7-4 | chr4:59390680-59390989 | XLOC_003961 |
| 2 | lnc-IGFBP7-4 | chr4:59390695-59390989 | XLOC_003961 |
| 3 | lnc-IGFBP7-4 | chr4:59390695-59390989 | XLOC_003961 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10517441 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11133574 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11934348 | 0.91[ASN][1000 genomes] |
| rs11938920 | 0.87[ASN][1000 genomes] |
| rs11941969 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11943628 | 0.87[ASN][1000 genomes] |
| rs12108627 | 0.87[ASN][1000 genomes] |
| rs55957721 | 0.87[ASN][1000 genomes] |
| rs56099606 | 0.87[ASN][1000 genomes] |
| rs73819288 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs73819291 | 0.92[ASN][1000 genomes] |
| rs73819297 | 0.86[ASN][1000 genomes] |
| rs7658382 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2762438 | chr4:58712109-59441414 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1011418 | chr4:59081528-59674340 | Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv879030 | chr4:59379696-59548868 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | esv3359777 | chr4:59387795-59391393 | Inactive region | lncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
