Variant report

Variant	rs11942072
Chromosome Location	chr4:127763740-127763741
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:127743580..127745854-chr4:127762876..127765537,2	K562	blood:
2	chr4:127761402..127763975-chr4:127765998..127768528,2	K562	blood:
3	chr4:127699055..127701009-chr4:127763669..127766462,2	K562	blood:
4	chr4:127761821..127763813-chr4:127877198..127878709,2	K562	blood:
5	chr4:127753877..127756551-chr4:127761614..127765337,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10010288	0.81[AFR][1000 genomes]
rs11929847	0.93[AFR][1000 genomes]
rs11930725	0.87[AFR][1000 genomes]
rs11934251	0.84[AFR][1000 genomes]
rs11937747	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11939318	0.81[AFR][1000 genomes]
rs11939770	1.00[AMR][1000 genomes]
rs11939964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11941249	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs11945977	0.84[AFR][1000 genomes]
rs17011543	0.82[AFR][1000 genomes]
rs17011549	0.82[AFR][1000 genomes]
rs17011608	0.84[AFR][1000 genomes]
rs17011807	1.00[AMR][1000 genomes]
rs28531370	0.81[AFR][1000 genomes]
rs6823751	0.81[AFR][1000 genomes]
rs6826241	0.81[AFR][1000 genomes]
rs6831800	0.81[AFR][1000 genomes]
rs6846724	0.93[AFR][1000 genomes]
rs6850034	0.86[AFR][1000 genomes]
rs6850749	0.87[AFR][1000 genomes]
rs6852317	0.81[AFR][1000 genomes]
rs7436204	0.81[AFR][1000 genomes]
rs7654071	0.86[AFR][1000 genomes]
rs7673481	0.82[AFR][1000 genomes]
rs7677436	0.82[AFR][1000 genomes]
rs7682055	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524850	chr4:127470903-127768849	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv879909	chr4:127646765-127792639	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv879910	chr4:127646765-127805466	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879912	chr4:127706053-127775563	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3367258	chr4:127749396-127772702	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127751000-127764000	Weak transcription	K562	blood
2	chr4:127761200-127764200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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