Variant report

Variant	rs17011549
Chromosome Location	chr4:127663771-127663772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:127663543..127666965-chr4:127667854..127672679,5	K562	blood:
2	chr4:127661132..127664302-chr4:127673229..127676858,3	K562	blood:
3	chr4:127662026..127664437-chr4:127681232..127683698,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10010288	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10012156	0.88[AFR][1000 genomes]
rs10025937	0.86[AFR][1000 genomes]
rs10027349	0.88[AFR][1000 genomes]
rs11930592	0.88[AFR][1000 genomes]
rs11930725	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11934251	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11935137	0.88[AFR][1000 genomes]
rs11939318	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11939964	0.82[AFR][1000 genomes]
rs11941249	1.00[YRI][hapmap]
rs11942072	0.82[AFR][1000 genomes]
rs11945977	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1552664	0.89[AFR][1000 genomes]
rs17011392	0.88[AFR][1000 genomes]
rs17011543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17011608	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28416472	0.81[AFR][1000 genomes]
rs28531370	0.82[AFR][1000 genomes]
rs28578629	0.89[AFR][1000 genomes]
rs28592768	0.86[AFR][1000 genomes]
rs28605129	0.89[AFR][1000 genomes]
rs28625618	0.88[AFR][1000 genomes]
rs28671296	0.86[AFR][1000 genomes]
rs28697890	0.83[AFR][1000 genomes]
rs28721403	0.91[AFR][1000 genomes]
rs28817587	0.80[AFR][1000 genomes]
rs28890552	0.88[AFR][1000 genomes]
rs6826241	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6831800	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6850749	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6852317	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7653964	0.89[AFR][1000 genomes]
rs7673481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7677436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7681644	0.89[AFR][1000 genomes]
rs7682055	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7691426	0.89[AFR][1000 genomes]
rs9884514	0.80[AFR][1000 genomes]
rs9995510	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012833	chr4:127468474-127760933	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv537242	chr4:127468474-127760933	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv524850	chr4:127470903-127768849	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1007477	chr4:127561735-127726291	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537244	chr4:127561735-127726291	Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2752024	chr4:127584697-127671942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv595386	chr4:127597069-127668828	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1028609	chr4:127597319-127664629	Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv879907	chr4:127646765-127709859	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	nsv879908	chr4:127646765-127749390	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	nsv879909	chr4:127646765-127792639	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv879910	chr4:127646765-127805466	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127660600-127666800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:127662200-127664400	Enhancers	K562	blood
3	chr4:127663200-127663800	Enhancers	Aorta	Aorta

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