Variant report

Variant	rs28605129
Chromosome Location	chr4:127632005-127632006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10005429	0.85[AFR][1000 genomes]
rs10010288	0.91[AFR][1000 genomes]
rs10012156	0.98[AFR][1000 genomes]
rs10025937	0.96[AFR][1000 genomes]
rs10027349	0.98[AFR][1000 genomes]
rs11930592	0.98[AFR][1000 genomes]
rs11930725	0.84[AFR][1000 genomes]
rs11933364	0.84[AFR][1000 genomes]
rs11934251	0.88[AFR][1000 genomes]
rs11935137	0.98[AFR][1000 genomes]
rs11939318	0.88[AFR][1000 genomes]
rs11945977	0.88[AFR][1000 genomes]
rs1552664	1.00[AFR][1000 genomes]
rs17011392	0.98[AFR][1000 genomes]
rs17011543	0.89[AFR][1000 genomes]
rs17011549	0.89[AFR][1000 genomes]
rs17011608	0.88[AFR][1000 genomes]
rs28386846	0.89[AFR][1000 genomes]
rs28416472	0.91[AFR][1000 genomes]
rs28531370	0.93[AFR][1000 genomes]
rs28578629	1.00[AFR][1000 genomes]
rs28592768	0.96[AFR][1000 genomes]
rs28625618	0.98[AFR][1000 genomes]
rs28671296	0.96[AFR][1000 genomes]
rs28697890	0.93[AFR][1000 genomes]
rs28721403	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28817587	0.90[AFR][1000 genomes]
rs28890552	0.98[AFR][1000 genomes]
rs6826241	0.88[AFR][1000 genomes]
rs6831800	0.88[AFR][1000 genomes]
rs6850749	0.84[AFR][1000 genomes]
rs6852317	0.88[AFR][1000 genomes]
rs7653964	1.00[AFR][1000 genomes]
rs7673481	0.89[AFR][1000 genomes]
rs7677436	0.89[AFR][1000 genomes]
rs7681644	1.00[AFR][1000 genomes]
rs7682055	0.88[AFR][1000 genomes]
rs7691426	1.00[AFR][1000 genomes]
rs9884514	0.90[AFR][1000 genomes]
rs9995510	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012833	chr4:127468474-127760933	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv537242	chr4:127468474-127760933	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv524850	chr4:127470903-127768849	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1013854	chr4:127508969-127663216	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1009499	chr4:127532856-127659010	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv537243	chr4:127532856-127659010	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1007477	chr4:127561735-127726291	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv537244	chr4:127561735-127726291	Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv2752024	chr4:127584697-127671942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv595386	chr4:127597069-127668828	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1028609	chr4:127597319-127664629	Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127629400-127632400	Enhancers	HMEC	breast
2	chr4:127631000-127632400	Strong transcription	K562	blood
3	chr4:127631200-127632800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:127631800-127632800	Enhancers	NHEK	skin
5	chr4:127632000-127632800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links