Variant report

Variant	rs6852317
Chromosome Location	chr4:127683837-127683838
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10010288	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10012156	0.86[AFR][1000 genomes]
rs10025937	0.84[AFR][1000 genomes]
rs10027349	0.86[AFR][1000 genomes]
rs11930592	0.86[AFR][1000 genomes]
rs11930725	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11934251	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11935137	0.86[AFR][1000 genomes]
rs11939318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11939964	0.81[AFR][1000 genomes]
rs11942072	0.81[AFR][1000 genomes]
rs11945977	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1552664	0.88[AFR][1000 genomes]
rs17011392	0.86[AFR][1000 genomes]
rs17011543	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17011549	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17011608	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28531370	0.81[AFR][1000 genomes]
rs28578629	0.88[AFR][1000 genomes]
rs28592768	0.84[AFR][1000 genomes]
rs28605129	0.88[AFR][1000 genomes]
rs28625618	0.86[AFR][1000 genomes]
rs28671296	0.84[AFR][1000 genomes]
rs28697890	0.81[AFR][1000 genomes]
rs28721403	0.89[AFR][1000 genomes]
rs28890552	0.86[AFR][1000 genomes]
rs6826241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6831800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6850749	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7653964	0.88[AFR][1000 genomes]
rs7673481	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7677436	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7681644	0.88[AFR][1000 genomes]
rs7682055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7691426	0.88[AFR][1000 genomes]
rs9995510	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012833	chr4:127468474-127760933	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv537242	chr4:127468474-127760933	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv524850	chr4:127470903-127768849	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1007477	chr4:127561735-127726291	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537244	chr4:127561735-127726291	Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879907	chr4:127646765-127709859	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv879908	chr4:127646765-127749390	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv879909	chr4:127646765-127792639	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv879910	chr4:127646765-127805466	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127677000-127684000	Weak transcription	K562	blood
2	chr4:127683600-127684000	Enhancers	NHEK	skin
3	chr4:127683600-127684200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:127683600-127684200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:127683800-127698000	Weak transcription	HMEC	breast

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