Variant report

Variant	rs11942405
Chromosome Location	chr4:94134229-94134230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10516414	0.84[EUR][1000 genomes]
rs11930015	0.84[EUR][1000 genomes]
rs11930057	0.84[EUR][1000 genomes]
rs11930100	0.84[EUR][1000 genomes]
rs11933263	0.85[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11933318	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12640701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12647937	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020257	0.84[EUR][1000 genomes]
rs17020267	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17020271	1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020279	1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020286	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56059412	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62309154	0.84[EUR][1000 genomes]
rs62309155	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62309156	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62310362	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62310363	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62310364	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72666942	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv931937	chr4:93869856-94155348	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1013255	chr4:94027129-94462345	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879615	chr4:94100410-94180567	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94121200-94145600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:94129000-94139400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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