Variant report

Variant	rs17020267
Chromosome Location	chr4:94138791-94138792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10516414	0.81[EUR][1000 genomes]
rs11930015	0.81[EUR][1000 genomes]
rs11930057	0.81[EUR][1000 genomes]
rs11930100	0.81[EUR][1000 genomes]
rs11933263	0.87[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11933318	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11934392	0.81[AFR][1000 genomes]
rs11942405	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12640701	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12643609	0.85[AFR][1000 genomes]
rs12647937	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17020257	0.81[EUR][1000 genomes]
rs17020271	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17020279	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17020286	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17020296	0.81[AFR][1000 genomes]
rs56059412	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62309154	0.81[EUR][1000 genomes]
rs62309155	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62309156	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62310362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62310363	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62310364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72666942	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv931937	chr4:93869856-94155348	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1013255	chr4:94027129-94462345	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879615	chr4:94100410-94180567	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94121200-94145600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:94129000-94139400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:94136600-94148000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:94136800-94145600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:94137600-94157400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:94137800-94138800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:94138000-94138800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:94138400-94139000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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