Variant report

Variant	rs17020257
Chromosome Location	chr4:94116723-94116724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10516414	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11097359	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11097360	0.84[EUR][1000 genomes]
rs11097361	0.93[EUR][1000 genomes]
rs11930015	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11930057	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11930100	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11932840	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11933263	0.81[CHB][hapmap];0.84[EUR][1000 genomes]
rs11933318	0.87[CEU][hapmap];0.81[CHB][hapmap];0.84[EUR][1000 genomes]
rs11936792	0.88[EUR][1000 genomes]
rs11939788	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11939921	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11940074	0.93[EUR][1000 genomes]
rs11942405	0.84[EUR][1000 genomes]
rs11945891	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12640701	0.84[EUR][1000 genomes]
rs12640844	0.93[EUR][1000 genomes]
rs12645274	0.86[EUR][1000 genomes]
rs12647937	0.84[EUR][1000 genomes]
rs12648848	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1503223	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17020267	0.81[EUR][1000 genomes]
rs17020271	0.87[CEU][hapmap];0.81[CHB][hapmap];0.84[EUR][1000 genomes]
rs17020279	0.87[CEU][hapmap];0.81[CHB][hapmap];0.84[EUR][1000 genomes]
rs55775839	0.84[EUR][1000 genomes]
rs56019979	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56059412	0.84[EUR][1000 genomes]
rs56119934	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56324528	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62308218	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62308221	0.84[EUR][1000 genomes]
rs62308222	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62308251	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62308252	0.84[EUR][1000 genomes]
rs62308253	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62308254	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62308255	0.86[EUR][1000 genomes]
rs62308256	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62309154	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62309155	0.84[EUR][1000 genomes]
rs62309156	0.81[EUR][1000 genomes]
rs62310362	0.84[EUR][1000 genomes]
rs62310363	0.84[EUR][1000 genomes]
rs62310364	0.84[EUR][1000 genomes]
rs6532387	0.86[EUR][1000 genomes]
rs66494208	0.86[EUR][1000 genomes]
rs6821061	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6824912	0.95[EUR][1000 genomes]
rs6832783	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6857551	0.93[EUR][1000 genomes]
rs72665288	0.84[EUR][1000 genomes]
rs72665301	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72666908	0.88[EUR][1000 genomes]
rs72666919	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7437416	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7669480	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv931937	chr4:93869856-94155348	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1013255	chr4:94027129-94462345	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879615	chr4:94100410-94180567	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94101600-94119600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:94116000-94119400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:94116600-94117800	Weak transcription	Brain Germinal Matrix	brain

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