Variant report

Variant	rs11097361
Chromosome Location	chr4:94110350-94110351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:94103224..94106173-chr4:94109926..94112248,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10516414	0.93[EUR][1000 genomes]
rs11930015	0.93[EUR][1000 genomes]
rs11930057	0.93[EUR][1000 genomes]
rs11930100	0.93[EUR][1000 genomes]
rs11933318	0.87[CEU][hapmap]
rs11936792	0.82[EUR][1000 genomes]
rs11939788	0.82[EUR][1000 genomes]
rs11939921	0.82[EUR][1000 genomes]
rs11940074	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11945891	0.82[EUR][1000 genomes]
rs12640844	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12645274	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1503223	0.98[EUR][1000 genomes]
rs17020257	0.93[EUR][1000 genomes]
rs17020271	0.87[CEU][hapmap]
rs17020279	0.87[CEU][hapmap]
rs56324528	0.82[EUR][1000 genomes]
rs62308255	0.85[EUR][1000 genomes]
rs62308256	0.82[EUR][1000 genomes]
rs62309154	0.93[EUR][1000 genomes]
rs6532387	0.85[EUR][1000 genomes]
rs66494208	0.85[EUR][1000 genomes]
rs6821061	0.82[EUR][1000 genomes]
rs6824912	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6832783	0.98[EUR][1000 genomes]
rs6857551	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72666908	0.82[EUR][1000 genomes]
rs72666919	0.82[EUR][1000 genomes]
rs7437416	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv931937	chr4:93869856-94155348	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1013255	chr4:94027129-94462345	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3450455	chr4:94047592-94111856	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv879615	chr4:94100410-94180567	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94101600-94119600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:94109600-94110800	Weak transcription	Fetal Brain Male	brain

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