Variant report
| Variant | rs6857551 |
|---|---|
| Chromosome Location | chr4:94117721-94117722 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10516414 | 0.93[EUR][1000 genomes] |
| rs11097361 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11930015 | 0.93[EUR][1000 genomes] |
| rs11930057 | 0.93[EUR][1000 genomes] |
| rs11930100 | 0.93[EUR][1000 genomes] |
| rs11933318 | 0.87[CEU][hapmap] |
| rs11936792 | 0.82[EUR][1000 genomes] |
| rs11938158 | 0.85[CHB][hapmap];0.82[JPT][hapmap] |
| rs11939788 | 0.82[EUR][1000 genomes] |
| rs11939921 | 0.82[EUR][1000 genomes] |
| rs11940074 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11945891 | 0.82[EUR][1000 genomes] |
| rs12640844 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12645274 | 0.85[EUR][1000 genomes] |
| rs1503223 | 0.98[EUR][1000 genomes] |
| rs17020257 | 0.93[EUR][1000 genomes] |
| rs17020271 | 0.87[CEU][hapmap] |
| rs17020279 | 0.87[CEU][hapmap] |
| rs56324528 | 0.82[EUR][1000 genomes] |
| rs62308255 | 0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs62308256 | 0.82[EUR][1000 genomes] |
| rs62309154 | 0.93[EUR][1000 genomes] |
| rs6532387 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs66494208 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6821061 | 0.82[EUR][1000 genomes] |
| rs6824912 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6832783 | 0.98[EUR][1000 genomes] |
| rs72666908 | 0.82[EUR][1000 genomes] |
| rs72666919 | 0.82[EUR][1000 genomes] |
| rs7437416 | 0.82[EUR][1000 genomes] |
| rs7697616 | 0.85[CHB][hapmap];0.86[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1007177 | chr4:93834536-94155349 | Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv537186 | chr4:93834536-94155349 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv931937 | chr4:93869856-94155348 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1013255 | chr4:94027129-94462345 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv879615 | chr4:94100410-94180567 | Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:94101600-94119600 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
| 2 | chr4:94116000-94119400 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 3 | chr4:94116600-94117800 | Weak transcription | Brain Germinal Matrix | brain |
