Variant report

Variant	rs6832783
Chromosome Location	chr4:94112341-94112342
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10516414	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11097359	0.85[ASN][1000 genomes]
rs11097361	0.98[EUR][1000 genomes]
rs11930015	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11930057	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11930100	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11932840	0.85[ASN][1000 genomes]
rs11933263	0.81[CHB][hapmap]
rs11933318	0.87[CEU][hapmap]
rs11936792	0.84[EUR][1000 genomes]
rs11939788	0.84[EUR][1000 genomes]
rs11939921	0.84[EUR][1000 genomes]
rs11940074	0.98[EUR][1000 genomes]
rs11945891	0.84[EUR][1000 genomes]
rs12640844	0.98[EUR][1000 genomes]
rs12645274	0.82[EUR][1000 genomes]
rs12648848	0.87[ASN][1000 genomes]
rs1503223	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020257	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17020271	0.87[CEU][hapmap];0.81[CHB][hapmap]
rs17020279	0.87[CEU][hapmap];0.81[CHB][hapmap]
rs56019979	0.85[ASN][1000 genomes]
rs56119934	0.87[ASN][1000 genomes]
rs56324528	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62308218	0.80[ASN][1000 genomes]
rs62308222	0.87[ASN][1000 genomes]
rs62308251	0.87[ASN][1000 genomes]
rs62308253	0.87[ASN][1000 genomes]
rs62308255	0.82[EUR][1000 genomes]
rs62308256	0.84[EUR][1000 genomes]
rs62309154	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6532387	0.82[EUR][1000 genomes]
rs66494208	0.82[EUR][1000 genomes]
rs6821061	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6824912	0.96[EUR][1000 genomes]
rs6857551	0.98[EUR][1000 genomes]
rs72665301	0.85[ASN][1000 genomes]
rs72666908	0.84[EUR][1000 genomes]
rs72666919	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7437416	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv931937	chr4:93869856-94155348	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1013255	chr4:94027129-94462345	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879615	chr4:94100410-94180567	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94101600-94119600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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