Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10516414	0.93[EUR][1000 genomes]
rs11097361	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11930015	0.93[EUR][1000 genomes]
rs11930057	0.93[EUR][1000 genomes]
rs11930100	0.93[EUR][1000 genomes]
rs11936792	0.82[EUR][1000 genomes]
rs11939788	0.82[EUR][1000 genomes]
rs11939921	0.82[EUR][1000 genomes]
rs11945891	0.82[EUR][1000 genomes]
rs12640844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12645274	0.85[EUR][1000 genomes]
rs1503223	0.98[EUR][1000 genomes]
rs17020257	0.93[EUR][1000 genomes]
rs56324528	0.82[EUR][1000 genomes]
rs62308255	0.85[EUR][1000 genomes]
rs62308256	0.82[EUR][1000 genomes]
rs62309154	0.93[EUR][1000 genomes]
rs6532387	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66494208	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6821061	0.82[EUR][1000 genomes]
rs6824912	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6832783	0.98[EUR][1000 genomes]
rs6857551	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72666908	0.82[EUR][1000 genomes]
rs72666919	0.82[EUR][1000 genomes]
rs7437416	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv931937	chr4:93869856-94155348	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1013255	chr4:94027129-94462345	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879615	chr4:94100410-94180567	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94118600-94120200	Weak transcription	Brain Germinal Matrix	brain
2	chr4:94119200-94121200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:94119400-94120800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr4:94119400-94121200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:94119600-94120800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:94119600-94120800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:94119600-94120800	Enhancers	Fetal Lung	lung
8	chr4:94119600-94121200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr4:94119600-94121400	Enhancers	Fetal Stomach	stomach
10	chr4:94119800-94120400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr4:94119800-94121200	Enhancers	H1 Cell Line	embryonic stem cell

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