Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11936331	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11938487	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11939393	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11941413	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11945532	0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11947094	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17005055	0.89[YRI][hapmap];0.88[AFR][1000 genomes]
rs1808945	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55888410	1.00[AFR][1000 genomes]
rs56371568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58173071	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59776288	0.83[AMR][1000 genomes]
rs60074402	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6811773	1.00[AFR][1000 genomes]
rs6844442	0.97[AFR][1000 genomes]
rs73832610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832615	1.00[AFR][1000 genomes]
rs73832618	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829984	chr4:81979988-82113977	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv1822437	chr4:82025743-82118996	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82025400-82051600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:82028200-82050600	Weak transcription	Fetal Intestine Large	intestine
3	chr4:82030000-82051200	Weak transcription	Fetal Intestine Small	intestine
4	chr4:82032800-82051200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:82035400-82052800	Weak transcription	NHDF-Ad	bronchial
6	chr4:82036800-82052200	Weak transcription	Fetal Brain Female	brain
7	chr4:82039200-82044200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:82039400-82043800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:82042200-82042400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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