Variant report

Variant	rs11948897
Chromosome Location	chr5:36194559-36194560
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36192543..36195185-chr5:36196204..36198346,2	MCF-7	breast:
2	chr5:36194202..36196445-chr5:36196850..36198557,2	K562	blood:
3	chr5:36194146..36197054-chr5:36239935..36241717,2	K562	blood:

Variant related genes	Relation type
ENSG00000152620	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10037032	1.00[AMR][1000 genomes]
rs10063940	1.00[AMR][1000 genomes]
rs10473016	1.00[AMR][1000 genomes]
rs11950102	1.00[AMR][1000 genomes]
rs11950804	1.00[AMR][1000 genomes]
rs11951946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11952182	1.00[AMR][1000 genomes]
rs11956190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11956549	1.00[AMR][1000 genomes]
rs16902808	1.00[AMR][1000 genomes]
rs16902940	1.00[AMR][1000 genomes]
rs2197514	1.00[AMR][1000 genomes]
rs34614382	1.00[AMR][1000 genomes]
rs4616926	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36154400-36210800	Weak transcription	Small Intestine	intestine
2	chr5:36163800-36200600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:36164800-36220800	Weak transcription	Gastric	stomach
4	chr5:36169600-36202400	Weak transcription	Fetal Heart	heart
5	chr5:36171800-36220600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:36172000-36229200	Weak transcription	Colonic Mucosa	Colon
7	chr5:36174200-36195200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr5:36175200-36202400	Weak transcription	Right Ventricle	heart
9	chr5:36175200-36220800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr5:36175600-36195800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr5:36175600-36222400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr5:36179000-36222800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr5:36179000-36230000	Weak transcription	Psoas Muscle	Psoas
14	chr5:36179200-36199800	Weak transcription	Colon Smooth Muscle	Colon
15	chr5:36179200-36210400	Weak transcription	Fetal Kidney	kidney
16	chr5:36179200-36212600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:36180400-36194800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr5:36180800-36197400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr5:36181200-36195000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr5:36181200-36202600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr5:36181400-36200600	Weak transcription	NHEK	skin
22	chr5:36181400-36212800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr5:36181800-36195000	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr5:36181800-36195000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr5:36182200-36195000	Weak transcription	HMEC	breast
26	chr5:36182200-36195200	Weak transcription	K562	blood
27	chr5:36182200-36195400	Weak transcription	NHLF	lung
28	chr5:36182200-36200800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr5:36182200-36214800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr5:36182400-36194600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr5:36182400-36195200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr5:36182400-36195400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr5:36182400-36195800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr5:36182600-36194600	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr5:36182800-36195000	Weak transcription	Primary T cells from cord blood	blood
36	chr5:36182800-36195000	Weak transcription	Brain Anterior Caudate	brain
37	chr5:36182800-36195200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr5:36182800-36198200	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr5:36182800-36220400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr5:36182800-36220600	Weak transcription	Brain Angular Gyrus	brain
41	chr5:36183000-36195000	Weak transcription	Brain Substantia Nigra	brain
42	chr5:36183200-36194800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr5:36183400-36195200	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr5:36184400-36194800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr5:36184400-36195200	Weak transcription	HSMMtube	muscle
46	chr5:36189800-36195200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr5:36190000-36200000	Weak transcription	Primary B cells from peripheral blood	blood
48	chr5:36190000-36202600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr5:36190000-36220800	Weak transcription	Spleen	Spleen
50	chr5:36190200-36207400	Strong transcription	Dnd41	blood

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