Variant report

Variant	rs34614382
Chromosome Location	chr5:36339910-36339911
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10037032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10063940	1.00[AMR][1000 genomes]
rs10073334	1.00[AFR][1000 genomes]
rs10473016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11948897	1.00[AMR][1000 genomes]
rs11950102	1.00[AMR][1000 genomes]
rs11950804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11951946	1.00[AMR][1000 genomes]
rs11952182	1.00[AMR][1000 genomes]
rs11956190	1.00[AMR][1000 genomes]
rs11956549	1.00[AMR][1000 genomes]
rs16902808	1.00[AMR][1000 genomes]
rs16902940	1.00[AMR][1000 genomes]
rs4512149	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881598	chr5:36248752-36382802	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36336600-36340000	Enhancers	Rectal Smooth Muscle	rectum
2	chr5:36338400-36340000	Enhancers	Colon Smooth Muscle	Colon
3	chr5:36339000-36341000	Weak transcription	Pancreas	Pancrea
4	chr5:36339200-36340000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:36339800-36340800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:36339800-36340800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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