Variant report

Variant	rs16902808
Chromosome Location	chr5:36198285-36198286
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36194202..36196445-chr5:36196850..36198557,2	K562	blood:
2	chr5:36192543..36195185-chr5:36196204..36198346,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10037032	1.00[AMR][1000 genomes]
rs10063940	1.00[AMR][1000 genomes]
rs10473016	1.00[AMR][1000 genomes]
rs11948897	1.00[AMR][1000 genomes]
rs11950102	1.00[AMR][1000 genomes]
rs11950804	1.00[AMR][1000 genomes]
rs11951946	1.00[AMR][1000 genomes]
rs11952182	1.00[AMR][1000 genomes]
rs11956190	1.00[AMR][1000 genomes]
rs11956549	1.00[AMR][1000 genomes]
rs16902940	1.00[AMR][1000 genomes]
rs2197514	1.00[AMR][1000 genomes]
rs34614382	1.00[AMR][1000 genomes]
rs4616926	1.00[AMR][1000 genomes]
rs57763251	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36154400-36210800	Weak transcription	Small Intestine	intestine
2	chr5:36163800-36200600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:36164800-36220800	Weak transcription	Gastric	stomach
4	chr5:36169600-36202400	Weak transcription	Fetal Heart	heart
5	chr5:36171800-36220600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:36172000-36229200	Weak transcription	Colonic Mucosa	Colon
7	chr5:36175200-36202400	Weak transcription	Right Ventricle	heart
8	chr5:36175200-36220800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:36175600-36222400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr5:36179000-36222800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:36179000-36230000	Weak transcription	Psoas Muscle	Psoas
12	chr5:36179200-36199800	Weak transcription	Colon Smooth Muscle	Colon
13	chr5:36179200-36210400	Weak transcription	Fetal Kidney	kidney
14	chr5:36179200-36212600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr5:36181200-36202600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr5:36181400-36200600	Weak transcription	NHEK	skin
17	chr5:36181400-36212800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr5:36182200-36200800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr5:36182200-36214800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr5:36182800-36220400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr5:36182800-36220600	Weak transcription	Brain Angular Gyrus	brain
22	chr5:36190000-36200000	Weak transcription	Primary B cells from peripheral blood	blood
23	chr5:36190000-36202600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:36190000-36220800	Weak transcription	Spleen	Spleen
25	chr5:36190200-36207400	Strong transcription	Dnd41	blood
26	chr5:36190200-36220800	Weak transcription	Esophagus	oesophagus
27	chr5:36190400-36198600	Strong transcription	Duodenum Smooth Muscle	Duodenum
28	chr5:36190400-36220800	Weak transcription	Lung	lung
29	chr5:36190600-36198600	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr5:36190600-36211000	Weak transcription	Fetal Stomach	stomach
31	chr5:36190600-36227400	Weak transcription	Thymus	Thymus
32	chr5:36190800-36200800	Strong transcription	Hela-S3	cervix
33	chr5:36190800-36202800	Strong transcription	HSMM	muscle
34	chr5:36190800-36206200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr5:36190800-36211000	Weak transcription	Fetal Intestine Small	intestine
36	chr5:36191000-36199600	Weak transcription	Fetal Brain Male	brain
37	chr5:36191400-36201000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr5:36191400-36203000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr5:36191800-36202400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr5:36191800-36220600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr5:36191800-36230000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr5:36192000-36198400	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr5:36192000-36200600	Weak transcription	Ovary	ovary
44	chr5:36192000-36202600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr5:36192000-36206000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr5:36192000-36224200	Weak transcription	Aorta	Aorta
47	chr5:36192600-36198400	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr5:36192600-36227800	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr5:36193000-36198400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr5:36193200-36198600	Strong transcription	Fetal Intestine Large	intestine

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