Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11949738	0.88[EUR][1000 genomes]
rs11949784	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11952890	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11958485	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11959383	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12109713	0.83[EUR][1000 genomes]
rs12656223	1.00[TSI][hapmap]
rs57529546	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs58134448	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59671995	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs61146816	0.83[EUR][1000 genomes]
rs6860157	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs73339263	0.83[EUR][1000 genomes]
rs73339278	0.83[EUR][1000 genomes]
rs73339281	0.83[EUR][1000 genomes]
rs73339286	0.83[EUR][1000 genomes]
rs73783512	0.83[EUR][1000 genomes]
rs73783538	0.88[EUR][1000 genomes]
rs73783539	0.88[EUR][1000 genomes]
rs73783540	0.88[EUR][1000 genomes]
rs73783541	0.88[EUR][1000 genomes]
rs73783556	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs73783557	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs73783560	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73783575	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73783579	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73783580	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73785524	0.88[EUR][1000 genomes]
rs73785526	0.88[EUR][1000 genomes]
rs73785527	0.88[EUR][1000 genomes]
rs9918170	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126499000-126499600	Enhancers	Stomach Mucosa	stomach
2	chr5:126499200-126499600	Enhancers	Rectal Mucosa Donor 31	rectum

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