Variant report
| Variant | rs73783579 |
|---|---|
| Chromosome Location | chr5:126471148-126471149 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11949784 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11950032 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11952890 | 0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11958485 | 0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11959383 | 0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12109713 | 0.94[EUR][1000 genomes] |
| rs58134448 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs58159475 | 0.89[EUR][1000 genomes] |
| rs61146816 | 0.94[EUR][1000 genomes] |
| rs6860157 | 0.94[EUR][1000 genomes] |
| rs73339263 | 0.94[EUR][1000 genomes] |
| rs73339278 | 0.94[EUR][1000 genomes] |
| rs73339281 | 0.94[EUR][1000 genomes] |
| rs73339286 | 0.94[EUR][1000 genomes] |
| rs73783512 | 0.94[EUR][1000 genomes] |
| rs73783538 | 1.00[EUR][1000 genomes] |
| rs73783539 | 1.00[EUR][1000 genomes] |
| rs73783540 | 1.00[EUR][1000 genomes] |
| rs73783541 | 1.00[EUR][1000 genomes] |
| rs73783556 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73783557 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73783560 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73783575 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73783580 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73787407 | 0.88[EUR][1000 genomes] |
| rs73787408 | 0.88[EUR][1000 genomes] |
| rs9918170 | 0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024265 | chr5:126213004-126691163 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033607 | chr5:126385181-127304459 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 3 | esv1816248 | chr5:126399039-126486539 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:126465400-126476000 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr5:126470800-126471800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
