Variant report

Variant	rs73783560
Chromosome Location	chr5:126451368-126451369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11949784	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11950032	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11952890	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11958485	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11959383	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12109713	0.94[EUR][1000 genomes]
rs58134448	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58159475	0.89[EUR][1000 genomes]
rs61146816	0.94[EUR][1000 genomes]
rs6860157	0.94[EUR][1000 genomes]
rs73339263	0.94[EUR][1000 genomes]
rs73339278	0.94[EUR][1000 genomes]
rs73339281	0.94[EUR][1000 genomes]
rs73339286	0.94[EUR][1000 genomes]
rs73783512	0.94[EUR][1000 genomes]
rs73783538	1.00[EUR][1000 genomes]
rs73783539	1.00[EUR][1000 genomes]
rs73783540	1.00[EUR][1000 genomes]
rs73783541	1.00[EUR][1000 genomes]
rs73783556	1.00[EUR][1000 genomes]
rs73783557	1.00[EUR][1000 genomes]
rs73783575	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73783579	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73783580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73787407	0.88[EUR][1000 genomes]
rs73787408	0.88[EUR][1000 genomes]
rs9918170	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv1816248	chr5:126399039-126486539	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126451000-126451400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:126451200-126451600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:126451200-126451600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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