Variant report

Variant	rs11956179
Chromosome Location	chr5:151947064-151947065
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10037655	0.85[EUR][1000 genomes]
rs10041396	0.85[EUR][1000 genomes]
rs10041415	0.85[EUR][1000 genomes]
rs10054152	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10056328	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11167585	0.88[EUR][1000 genomes]
rs11948856	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12515178	0.85[EUR][1000 genomes]
rs12518097	0.88[EUR][1000 genomes]
rs12522538	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17113485	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17453880	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35558681	0.81[EUR][1000 genomes]
rs4391148	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4487479	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4610448	0.88[EUR][1000 genomes]
rs4612055	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4618416	0.88[EUR][1000 genomes]
rs4958321	0.88[EUR][1000 genomes]
rs4958322	0.88[EUR][1000 genomes]
rs4958324	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4958570	0.88[EUR][1000 genomes]
rs4958571	0.87[EUR][1000 genomes]
rs4958572	0.86[EUR][1000 genomes]
rs57358310	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59126622	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60862272	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6863717	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6869035	0.87[EUR][1000 genomes]
rs6869129	0.88[EUR][1000 genomes]
rs6869968	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6871986	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6885111	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6885419	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6886482	0.86[EUR][1000 genomes]
rs7730088	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151938200-151947200	Weak transcription	Fetal Brain Male	brain
2	chr5:151944000-151947600	Enhancers	Brain Germinal Matrix	brain
3	chr5:151945600-151949200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:151945800-151947200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:151946200-151948400	Weak transcription	Brain Angular Gyrus	brain
6	chr5:151946600-151947200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr5:151946600-151948400	Enhancers	Fetal Lung	lung
8	chr5:151946800-151947800	Enhancers	Brain Cingulate Gyrus	brain
9	chr5:151946800-151949600	Enhancers	Brain Substantia Nigra	brain
10	chr5:151947000-151947400	Weak transcription	Fetal Brain Female	brain
11	chr5:151947000-151947600	Enhancers	Brain Hippocampus Middle	brain
12	chr5:151947000-151947800	Enhancers	Brain Anterior Caudate	brain

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