Variant report

Variant	rs57358310
Chromosome Location	chr5:151948242-151948243
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10037655	0.86[EUR][1000 genomes]
rs10041396	0.86[EUR][1000 genomes]
rs10041415	0.86[EUR][1000 genomes]
rs10054152	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10056328	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11167585	0.89[EUR][1000 genomes]
rs11948856	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11956179	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12515178	0.86[EUR][1000 genomes]
rs12518097	0.89[EUR][1000 genomes]
rs12522538	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17113421	0.81[AFR][1000 genomes]
rs17113485	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17453740	0.81[AMR][1000 genomes]
rs17453775	0.81[AMR][1000 genomes]
rs17453880	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17454420	0.81[AMR][1000 genomes]
rs35558681	0.82[EUR][1000 genomes]
rs4391148	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4487479	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4610448	0.89[EUR][1000 genomes]
rs4612055	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4618416	0.89[EUR][1000 genomes]
rs4958320	0.81[AMR][1000 genomes]
rs4958321	0.89[EUR][1000 genomes]
rs4958322	0.89[EUR][1000 genomes]
rs4958323	0.81[AMR][1000 genomes]
rs4958324	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4958570	0.89[EUR][1000 genomes]
rs4958571	0.88[EUR][1000 genomes]
rs4958572	0.87[EUR][1000 genomes]
rs55970355	0.81[AFR][1000 genomes]
rs56014830	0.81[AMR][1000 genomes]
rs59126622	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60862272	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6863717	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6869035	0.88[EUR][1000 genomes]
rs6869129	0.89[EUR][1000 genomes]
rs6869968	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6871986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6872346	0.90[AFR][1000 genomes]
rs6885111	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6885419	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6886482	0.87[EUR][1000 genomes]
rs6891765	0.83[AFR][1000 genomes]
rs72797233	0.81[AMR][1000 genomes]
rs72797237	0.81[AMR][1000 genomes]
rs72797241	0.81[AMR][1000 genomes]
rs72797243	0.81[AMR][1000 genomes]
rs72797254	0.81[AMR][1000 genomes]
rs7730088	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151945600-151949200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr5:151946200-151948400	Weak transcription	Brain Angular Gyrus	brain
3	chr5:151946600-151948400	Enhancers	Fetal Lung	lung
4	chr5:151946800-151949600	Enhancers	Brain Substantia Nigra	brain
5	chr5:151947200-151948400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr5:151948000-151948400	Enhancers	Brain Hippocampus Middle	brain
7	chr5:151948000-151949800	Enhancers	Brain Germinal Matrix	brain
8	chr5:151948200-151948600	Enhancers	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links