Variant report

Variant	rs17453880
Chromosome Location	chr5:151977841-151977842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:7755817..7756409-chr5:151977437..151978212,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10037655	0.90[EUR][1000 genomes]
rs10041396	0.90[EUR][1000 genomes]
rs10041415	0.90[EUR][1000 genomes]
rs10054152	0.92[EUR][1000 genomes]
rs10056328	0.92[EUR][1000 genomes]
rs11167585	0.92[EUR][1000 genomes]
rs11948856	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11956179	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12515178	0.90[EUR][1000 genomes]
rs12518097	0.92[EUR][1000 genomes]
rs12522538	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17113485	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17453740	0.81[AMR][1000 genomes]
rs17453775	0.81[AMR][1000 genomes]
rs17454420	0.81[AMR][1000 genomes]
rs17565693	0.90[CEU][hapmap]
rs35558681	0.85[EUR][1000 genomes]
rs4391148	0.92[EUR][1000 genomes]
rs4473762	0.81[EUR][1000 genomes]
rs4487479	0.94[EUR][1000 genomes]
rs4610448	0.92[EUR][1000 genomes]
rs4612055	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4618416	0.92[EUR][1000 genomes]
rs4958320	0.81[AMR][1000 genomes]
rs4958321	0.92[EUR][1000 genomes]
rs4958322	0.92[EUR][1000 genomes]
rs4958323	0.81[AMR][1000 genomes]
rs4958324	0.92[EUR][1000 genomes]
rs4958570	0.92[EUR][1000 genomes]
rs4958571	0.92[EUR][1000 genomes]
rs4958572	0.91[EUR][1000 genomes]
rs56014830	0.81[AMR][1000 genomes]
rs57358310	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59126622	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60862272	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6863717	0.92[EUR][1000 genomes]
rs6869035	0.91[EUR][1000 genomes]
rs6869129	0.92[EUR][1000 genomes]
rs6869968	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6871986	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6885111	0.92[EUR][1000 genomes]
rs6885419	0.92[EUR][1000 genomes]
rs6886482	0.91[EUR][1000 genomes]
rs72797233	0.81[AMR][1000 genomes]
rs72797237	0.81[AMR][1000 genomes]
rs72797241	0.81[AMR][1000 genomes]
rs72797243	0.81[AMR][1000 genomes]
rs72797254	0.81[AMR][1000 genomes]
rs7730088	0.92[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151975600-151985800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:151976800-151978400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:151977200-151978000	Enhancers	Placenta Amnion	Placenta Amnion

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