Variant report

Variant	rs4473762
Chromosome Location	chr5:152065361-152065362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10037655	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10041396	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10041415	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10054152	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10056328	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11167585	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11948856	0.80[ASN][1000 genomes]
rs12515178	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12518097	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12522538	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17113485	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17113605	0.83[ASN][1000 genomes]
rs17453880	0.81[EUR][1000 genomes]
rs34184277	0.82[ASN][1000 genomes]
rs35558681	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4391148	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4487479	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4610448	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4612055	0.81[EUR][1000 genomes]
rs4618416	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4958321	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4958322	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4958324	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4958570	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4958571	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4958572	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58616307	0.88[AFR][1000 genomes]
rs59126622	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60862272	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6863717	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6869035	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6869129	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6885111	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6885419	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6886482	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7701379	0.86[AFR][1000 genomes]
rs7730088	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:152063200-152068600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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