Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11955130	0.88[ASN][1000 genomes]
rs11960155	0.83[ASN][1000 genomes]
rs17113482	0.82[ASN][1000 genomes]
rs17113489	0.83[ASN][1000 genomes]
rs17113492	0.83[ASN][1000 genomes]
rs17113527	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17113590	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17113605	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34184277	0.85[EUR][1000 genomes]
rs4473762	0.86[AFR][1000 genomes]
rs57670604	0.83[ASN][1000 genomes]
rs58616307	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59054470	0.88[ASN][1000 genomes]
rs61031397	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62395589	0.83[ASN][1000 genomes]
rs62395590	0.83[ASN][1000 genomes]
rs62395600	0.88[ASN][1000 genomes]
rs62398711	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73801718	0.88[ASN][1000 genomes]
rs7702312	0.83[ASN][1000 genomes]
rs7703966	0.88[ASN][1000 genomes]
rs7730407	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7735160	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:152055600-152056800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search: