Variant report

Variant	rs11955130
Chromosome Location	chr5:152005058-152005059
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11960155	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17113408	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17113421	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17113482	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17113489	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17113492	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17113527	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17113590	0.89[ASN][1000 genomes]
rs17113605	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34184277	0.83[EUR][1000 genomes]
rs4074300	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55970355	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57670604	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58616307	0.88[ASN][1000 genomes]
rs58664268	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59054470	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61031397	0.93[ASN][1000 genomes]
rs62395589	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62395590	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62395600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62395602	0.85[EUR][1000 genomes]
rs62398711	0.87[ASN][1000 genomes]
rs6869771	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6872346	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6875259	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6891765	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73801718	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7701379	0.88[ASN][1000 genomes]
rs7702312	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7703966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703981	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7730407	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7735160	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:152002200-152005400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:152002600-152005200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:152002600-152010400	Weak transcription	Fetal Lung	lung
4	chr5:152002600-152013600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:152002600-152014000	Weak transcription	Brain Substantia Nigra	brain
6	chr5:152002800-152008000	Weak transcription	Fetal Brain Male	brain
7	chr5:152004000-152005200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:152004200-152014200	Weak transcription	Spleen	Spleen
9	chr5:152004600-152005600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr5:152005000-152005800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:152005000-152005800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:152005000-152005800	Enhancers	Brain Germinal Matrix	brain
13	chr5:152005000-152006600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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