Variant report

Variant	rs58664268
Chromosome Location	chr5:151947234-151947235
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11955130	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11960155	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17113408	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17113421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17113482	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17113489	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17113492	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17113527	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4074300	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55970355	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57670604	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59054470	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62395589	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62395590	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62395600	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62395602	0.92[EUR][1000 genomes]
rs6869771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6872346	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6875259	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6891765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73801718	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7702312	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7703966	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7703981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7730407	0.84[EUR][1000 genomes]
rs7735160	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151944000-151947600	Enhancers	Brain Germinal Matrix	brain
2	chr5:151945600-151949200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:151946200-151948400	Weak transcription	Brain Angular Gyrus	brain
4	chr5:151946600-151948400	Enhancers	Fetal Lung	lung
5	chr5:151946800-151947800	Enhancers	Brain Cingulate Gyrus	brain
6	chr5:151946800-151949600	Enhancers	Brain Substantia Nigra	brain
7	chr5:151947000-151947400	Weak transcription	Fetal Brain Female	brain
8	chr5:151947000-151947600	Enhancers	Brain Hippocampus Middle	brain
9	chr5:151947000-151947800	Enhancers	Brain Anterior Caudate	brain
10	chr5:151947200-151947400	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr5:151947200-151948200	Enhancers	Fetal Brain Male	brain
12	chr5:151947200-151948400	Enhancers	Cortex derived primary cultured neurospheres	brain

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