Variant report

Variant	rs6875259
Chromosome Location	chr5:151946335-151946336
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11955130	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11960155	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17113408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17113421	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17113482	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17113489	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17113492	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17113527	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4074300	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55970355	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57670604	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58664268	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59054470	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62395589	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62395590	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62395600	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62395602	0.90[EUR][1000 genomes]
rs6869771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6872346	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6891765	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73801718	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7702312	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7703966	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7703981	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7730407	0.82[EUR][1000 genomes]
rs7735160	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151937000-151946800	Weak transcription	Brain Substantia Nigra	brain
2	chr5:151938200-151947200	Weak transcription	Fetal Brain Male	brain
3	chr5:151944000-151947600	Enhancers	Brain Germinal Matrix	brain
4	chr5:151945200-151946800	Weak transcription	Fetal Brain Female	brain
5	chr5:151945600-151946400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr5:151945600-151946800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr5:151945600-151947000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr5:151945600-151949200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:151945800-151946600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr5:151945800-151946600	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr5:151945800-151947200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr5:151946000-151947000	Weak transcription	Brain Hippocampus Middle	brain
13	chr5:151946200-151946400	Enhancers	Brain Cingulate Gyrus	brain
14	chr5:151946200-151948400	Weak transcription	Brain Angular Gyrus	brain

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