Variant report

Variant	rs34184277
Chromosome Location	chr5:152028257-152028258
allele	AC/GT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10037655	0.94[ASN][1000 genomes]
rs10041396	0.93[ASN][1000 genomes]
rs10041415	0.94[ASN][1000 genomes]
rs10054152	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10056328	0.93[ASN][1000 genomes]
rs11167585	0.94[ASN][1000 genomes]
rs11948856	0.87[ASN][1000 genomes]
rs11955130	0.83[EUR][1000 genomes]
rs11960155	0.83[EUR][1000 genomes]
rs12515178	0.92[ASN][1000 genomes]
rs12518097	0.94[ASN][1000 genomes]
rs12522538	0.92[ASN][1000 genomes]
rs17113482	0.83[EUR][1000 genomes]
rs17113485	0.87[ASN][1000 genomes]
rs17113489	0.83[EUR][1000 genomes]
rs17113492	0.83[EUR][1000 genomes]
rs17113527	0.90[EUR][1000 genomes]
rs17113590	0.85[EUR][1000 genomes]
rs17113605	0.83[EUR][1000 genomes]
rs35502931	0.90[ASN][1000 genomes]
rs35558681	0.90[ASN][1000 genomes]
rs4074300	0.83[EUR][1000 genomes]
rs4391148	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4473762	0.82[ASN][1000 genomes]
rs4487479	0.91[ASN][1000 genomes]
rs4610448	0.94[ASN][1000 genomes]
rs4612055	0.84[ASN][1000 genomes]
rs4618416	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4958321	0.94[ASN][1000 genomes]
rs4958322	0.94[ASN][1000 genomes]
rs4958324	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4958570	0.94[ASN][1000 genomes]
rs4958571	0.94[ASN][1000 genomes]
rs4958572	0.94[ASN][1000 genomes]
rs57670604	0.83[EUR][1000 genomes]
rs58616307	0.85[EUR][1000 genomes]
rs59054470	0.81[EUR][1000 genomes]
rs59126622	0.92[ASN][1000 genomes]
rs60862272	0.91[ASN][1000 genomes]
rs61031397	0.88[EUR][1000 genomes]
rs62395589	0.83[EUR][1000 genomes]
rs62395590	0.83[EUR][1000 genomes]
rs62395600	0.83[EUR][1000 genomes]
rs62398711	0.85[EUR][1000 genomes]
rs6863717	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6869035	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6869129	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6885111	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6885419	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6886482	0.91[ASN][1000 genomes]
rs6895232	0.90[ASN][1000 genomes]
rs7701379	0.85[EUR][1000 genomes]
rs7702312	0.83[EUR][1000 genomes]
rs7703966	0.83[EUR][1000 genomes]
rs7730088	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7730407	0.90[EUR][1000 genomes]
rs7735160	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv5074	chr5:152010691-152055779	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:152022200-152029400	Weak transcription	Aorta	Aorta
2	chr5:152024400-152029800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:152024600-152030000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:152026000-152030200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:152026400-152028600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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