Variant report
| Variant | rs61031397 |
|---|---|
| Chromosome Location | chr5:152044497-152044498 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-NMUR2-4 | chr5:152044414-152044538 | ucscGeneNc_uc003luw_1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11955130 | 0.93[ASN][1000 genomes] |
| rs11960155 | 0.87[ASN][1000 genomes] |
| rs17113482 | 0.86[ASN][1000 genomes] |
| rs17113489 | 0.87[ASN][1000 genomes] |
| rs17113492 | 0.87[ASN][1000 genomes] |
| rs17113527 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17113590 | 0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17113605 | 0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs34184277 | 0.88[EUR][1000 genomes] |
| rs4074300 | 0.84[ASN][1000 genomes] |
| rs57670604 | 0.87[ASN][1000 genomes] |
| rs58616307 | 0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs59054470 | 0.93[ASN][1000 genomes] |
| rs62395589 | 0.87[ASN][1000 genomes] |
| rs62395590 | 0.87[ASN][1000 genomes] |
| rs62395600 | 0.93[ASN][1000 genomes] |
| rs62398711 | 0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs73801718 | 0.93[ASN][1000 genomes] |
| rs7701379 | 0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7702312 | 0.87[ASN][1000 genomes] |
| rs7703966 | 0.93[ASN][1000 genomes] |
| rs7730407 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7735160 | 0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023676 | chr5:151979253-152925064 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv537927 | chr5:151979253-152925064 | Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv5074 | chr5:152010691-152055779 | Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs61031397 | G3BP1 | cis | brain | BrainEAC |
Chromatin state (count:0 , 50 per page) page:
| No data |
