Variant report

Variant	rs11958448
Chromosome Location	chrX:137890921-137890922
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11135533	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11135534	0.93[ASN][1000 genomes]
rs11135535	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11135536	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11135546	0.93[ASN][1000 genomes]
rs11739685	0.93[ASN][1000 genomes]
rs11741372	0.93[ASN][1000 genomes]
rs11742020	0.93[ASN][1000 genomes]
rs11742033	0.93[ASN][1000 genomes]
rs11742228	0.93[ASN][1000 genomes]
rs11948604	0.93[ASN][1000 genomes]
rs11951691	1.00[ASN][1000 genomes]
rs11951743	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11952012	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11952804	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11953565	0.93[ASN][1000 genomes]
rs11954953	0.93[ASN][1000 genomes]
rs11955639	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11955806	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11955809	0.93[ASN][1000 genomes]
rs11957127	0.93[ASN][1000 genomes]
rs11957285	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11958382	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11958384	0.85[ASN][1000 genomes]
rs11959461	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11960597	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12652203	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12652224	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12655656	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17087911	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34471407	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35576919	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4377726	0.93[ASN][1000 genomes]
rs4461658	0.93[ASN][1000 genomes]
rs4518427	0.93[ASN][1000 genomes]
rs59069286	0.93[ASN][1000 genomes]
rs6557014	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6557015	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73154946	0.93[ASN][1000 genomes]
rs73154947	0.93[ASN][1000 genomes]
rs73154954	0.93[ASN][1000 genomes]
rs73154956	0.93[ASN][1000 genomes]
rs73154957	0.93[ASN][1000 genomes]
rs73154962	0.93[ASN][1000 genomes]
rs73154963	0.93[ASN][1000 genomes]
rs73154965	0.93[ASN][1000 genomes]
rs73154987	0.93[ASN][1000 genomes]
rs73154988	0.93[ASN][1000 genomes]
rs73154995	0.93[ASN][1000 genomes]
rs73154998	0.93[ASN][1000 genomes]
rs73156003	0.93[ASN][1000 genomes]
rs73156004	0.93[ASN][1000 genomes]
rs73776225	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7703831	0.93[ASN][1000 genomes]
rs7715192	0.93[ASN][1000 genomes]
rs7715212	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525867	chrX:137580983-138439843	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:137885600-137940200	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links