Variant report

Variant	rs11955639
Chromosome Location	chr5:97250226-97250227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11135533	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11135534	1.00[ASN][1000 genomes]
rs11135535	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11135536	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11135546	1.00[ASN][1000 genomes]
rs11739685	1.00[ASN][1000 genomes]
rs11741372	1.00[ASN][1000 genomes]
rs11742020	1.00[ASN][1000 genomes]
rs11742033	1.00[ASN][1000 genomes]
rs11742228	1.00[ASN][1000 genomes]
rs11948604	1.00[ASN][1000 genomes]
rs11951691	0.93[ASN][1000 genomes]
rs11951743	0.86[ASN][1000 genomes]
rs11952012	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11952804	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953565	1.00[ASN][1000 genomes]
rs11954953	1.00[ASN][1000 genomes]
rs11955806	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11955809	1.00[ASN][1000 genomes]
rs11957127	1.00[ASN][1000 genomes]
rs11957285	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958448	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11959461	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11960597	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12652203	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12652224	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12655656	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17087911	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34471407	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35576919	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4377726	1.00[ASN][1000 genomes]
rs4461658	1.00[ASN][1000 genomes]
rs4518427	1.00[ASN][1000 genomes]
rs59069286	1.00[ASN][1000 genomes]
rs6557014	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6557015	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154946	1.00[ASN][1000 genomes]
rs73154947	1.00[ASN][1000 genomes]
rs73154954	1.00[ASN][1000 genomes]
rs73154956	1.00[ASN][1000 genomes]
rs73154957	1.00[ASN][1000 genomes]
rs73154962	1.00[ASN][1000 genomes]
rs73154963	1.00[ASN][1000 genomes]
rs73154965	1.00[ASN][1000 genomes]
rs73154987	1.00[ASN][1000 genomes]
rs73154988	1.00[ASN][1000 genomes]
rs73154995	1.00[ASN][1000 genomes]
rs73154998	1.00[ASN][1000 genomes]
rs73156003	1.00[ASN][1000 genomes]
rs73156004	1.00[ASN][1000 genomes]
rs73776225	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7703831	1.00[ASN][1000 genomes]
rs7715192	1.00[ASN][1000 genomes]
rs7715212	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534326	chr5:96531217-97283481	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1031429	chr5:96777286-97269498	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv527650	chr5:96783726-97260358	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1028224	chr5:96791214-97258383	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv537814	chr5:96791214-97258383	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1020125	chr5:96937248-97350644	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2754965	chr5:97013452-97296147	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv830418	chr5:97139371-97326878	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv3372859	chr5:97190949-97325577	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1016231	chr5:97206242-97420435	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv471025	chr5:97242130-97314521	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97249600-97250600	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr5:97250200-97251200	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links