Variant report

Variant	rs12655656
Chromosome Location	chr5:97213225-97213226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr5:97213218-97213671	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:97207148..97208975-chr5:97213192..97214894,2	K562	blood:

Variant related genes	Relation type
ENSG00000248202	TF binding region

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11135531	1.00[JPT][hapmap]
rs11135532	1.00[JPT][hapmap]
rs11135533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11135534	1.00[ASN][1000 genomes]
rs11135535	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11135536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11135546	1.00[ASN][1000 genomes]
rs11739685	1.00[ASN][1000 genomes]
rs11741372	1.00[ASN][1000 genomes]
rs11742020	1.00[ASN][1000 genomes]
rs11742033	1.00[ASN][1000 genomes]
rs11742228	1.00[ASN][1000 genomes]
rs11948604	1.00[ASN][1000 genomes]
rs11951691	0.93[ASN][1000 genomes]
rs11951743	0.86[ASN][1000 genomes]
rs11952012	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11952804	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953565	1.00[ASN][1000 genomes]
rs11954953	1.00[ASN][1000 genomes]
rs11955639	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11955806	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11955809	1.00[ASN][1000 genomes]
rs11957127	1.00[ASN][1000 genomes]
rs11957285	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958448	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11959461	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11960597	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12652203	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12652224	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17087911	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34471407	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35576919	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4377726	1.00[ASN][1000 genomes]
rs4461658	1.00[ASN][1000 genomes]
rs4518427	1.00[ASN][1000 genomes]
rs59069286	1.00[ASN][1000 genomes]
rs6557014	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6557015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154946	1.00[ASN][1000 genomes]
rs73154947	1.00[ASN][1000 genomes]
rs73154954	1.00[ASN][1000 genomes]
rs73154956	1.00[ASN][1000 genomes]
rs73154957	1.00[ASN][1000 genomes]
rs73154962	1.00[ASN][1000 genomes]
rs73154963	1.00[ASN][1000 genomes]
rs73154965	1.00[ASN][1000 genomes]
rs73154987	1.00[ASN][1000 genomes]
rs73154988	1.00[ASN][1000 genomes]
rs73154995	1.00[ASN][1000 genomes]
rs73154998	1.00[ASN][1000 genomes]
rs73156003	1.00[ASN][1000 genomes]
rs73156004	1.00[ASN][1000 genomes]
rs73776225	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7703831	1.00[ASN][1000 genomes]
rs7715192	1.00[ASN][1000 genomes]
rs7715212	1.00[ASN][1000 genomes]
rs7715312	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534326	chr5:96531217-97283481	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1031429	chr5:96777286-97269498	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv527650	chr5:96783726-97260358	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1028224	chr5:96791214-97258383	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv537814	chr5:96791214-97258383	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1020125	chr5:96937248-97350644	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv432757	chr5:97006304-97213768	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv2754965	chr5:97013452-97296147	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1034347	chr5:97062961-97241450	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv830418	chr5:97139371-97326878	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv3372859	chr5:97190949-97325577	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1016231	chr5:97206242-97420435	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97210800-97213800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:97212800-97213600	Enhancers	NHDF-Ad	bronchial
3	chr5:97213200-97214000	Enhancers	Brain Inferior Temporal Lobe	brain

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