Variant report

Variant	rs1196157
Chromosome Location	chr2:182925120-182925121
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:56736144..56737949-chr2:182924684..182927104,2	MCF-7	breast:
2	chr2:182923273..182925429-chr2:182929671..182932801,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000202077	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1196155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1196160	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1196167	0.89[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1196183	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1196185	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12617778	0.81[EUR][1000 genomes]
rs12693291	0.90[CEU][hapmap]
rs12693292	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs13003589	0.90[CEU][hapmap]
rs13017711	0.86[EUR][1000 genomes]
rs1400009	0.83[EUR][1000 genomes]
rs16822401	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs16822409	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16822412	0.83[EUR][1000 genomes]
rs1913896	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2701664	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2701665	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2701666	0.96[YRI][hapmap]
rs4666807	0.81[EUR][1000 genomes]
rs6433953	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs6732434	0.81[EUR][1000 genomes]
rs6747855	0.80[EUR][1000 genomes]
rs7560061	0.86[EUR][1000 genomes]
rs7589699	0.86[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1196157	PPP1R1C	cis	Thyroid	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182903200-182928400	Weak transcription	Left Ventricle	heart
2	chr2:182918400-182928400	Weak transcription	Fetal Thymus	thymus
3	chr2:182918800-182937400	Weak transcription	Thymus	Thymus
4	chr2:182921200-182928800	Weak transcription	Fetal Heart	heart
5	chr2:182924200-182925400	Weak transcription	Liver	Liver

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