Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10497590	0.85[GIH][hapmap]
rs1153731	0.80[TSI][hapmap]
rs1196155	1.00[CEU][hapmap];0.82[GIH][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs1196157	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1196160	1.00[CEU][hapmap];0.84[GIH][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs1196167	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs1196183	0.82[EUR][1000 genomes]
rs1196185	0.94[CEU][hapmap]
rs12617778	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12693291	0.94[CEU][hapmap]
rs12693292	0.94[CEU][hapmap]
rs13003589	0.94[CEU][hapmap]
rs1400009	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1400010	0.86[EUR][1000 genomes]
rs16822341	0.82[YRI][hapmap]
rs16822401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16822409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1913896	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs2701664	1.00[CEU][hapmap];0.84[GIH][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs2701665	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs3754930	0.92[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4666807	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6433945	0.82[YRI][hapmap]
rs6433953	0.94[CEU][hapmap]
rs6717118	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16822412	PPP1R1C	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182903200-182928400	Weak transcription	Left Ventricle	heart
2	chr2:182907600-182915600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr2:182911800-182915600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:182912000-182915400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:182913800-182915800	Weak transcription	Aorta	Aorta
6	chr2:182914200-182914400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:182914200-182914800	Enhancers	Colon Smooth Muscle	Colon
8	chr2:182914200-182915200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:182914200-182915200	Enhancers	Osteobl	bone

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