Variant report

Variant	rs1400010
Chromosome Location	chr2:182915502-182915503
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1196155	0.94[CEU][hapmap]
rs1196157	0.90[CEU][hapmap]
rs1196160	0.94[CEU][hapmap]
rs1196167	0.89[CEU][hapmap]
rs1196185	0.89[CEU][hapmap]
rs12617778	0.85[EUR][1000 genomes]
rs12693291	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12693292	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs13003589	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs13017711	0.83[EUR][1000 genomes]
rs1400009	0.86[EUR][1000 genomes]
rs16822401	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs16822409	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs16822412	0.86[EUR][1000 genomes]
rs1913896	0.83[CEU][hapmap]
rs2701664	0.94[CEU][hapmap]
rs2701665	0.90[CEU][hapmap]
rs4666807	0.85[EUR][1000 genomes]
rs6433953	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs6732434	0.81[EUR][1000 genomes]
rs6747855	0.83[EUR][1000 genomes]
rs7560061	0.83[EUR][1000 genomes]
rs7589699	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182903200-182928400	Weak transcription	Left Ventricle	heart
2	chr2:182907600-182915600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr2:182911800-182915600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:182913800-182915800	Weak transcription	Aorta	Aorta
5	chr2:182914600-182915600	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr2:182914600-182916600	Enhancers	Liver	Liver
7	chr2:182914800-182916000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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