Variant report

Variant	rs1196167
Chromosome Location	chr2:182932398-182932399
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:182920138..182923080-chr2:182928492..182933941,4	MCF-7	breast:
2	chr2:182880540..182889219-chr2:182930483..182937514,17	MCF-7	breast:
3	chr2:182753389..182769521-chr2:182932013..182949608,79	MCF-7	breast:
4	chr2:182932067..182937899-chr2:182939888..182947237,17	MCF-7	breast:
5	chr2:182755436..182758763-chr2:182932137..182938145,9	MCF-7	breast:
6	chr2:182759806..182765656-chr2:182931890..182935341,6	MCF-7	breast:
7	chr2:182770558..182778362-chr2:182931728..182936504,7	MCF-7	breast:
8	chr2:182781794..182783330-chr2:182931429..182933676,2	MCF-7	breast:
9	chr2:182925951..182930145-chr2:182930347..182935935,6	MCF-7	breast:
10	chr2:182882960..182887260-chr2:182931387..182935614,8	MCF-7	breast:
11	chr2:182923273..182925429-chr2:182929671..182932801,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000150722	Chromatin interaction
ENSG00000260742	Chromatin interaction
ENSG00000138434	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1196155	0.89[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1196157	0.89[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1196160	0.89[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1196183	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1196185	0.83[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12617778	0.82[EUR][1000 genomes]
rs12693291	0.89[CEU][hapmap]
rs12693292	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs13003589	0.89[CEU][hapmap]
rs13017711	0.87[EUR][1000 genomes]
rs1400009	0.83[EUR][1000 genomes]
rs16822401	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs16822409	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs16822412	0.83[EUR][1000 genomes]
rs1913896	0.82[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2701664	0.89[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2701665	0.89[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.80[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2701666	1.00[YRI][hapmap]
rs4666807	0.82[EUR][1000 genomes]
rs6433953	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs6732434	0.81[EUR][1000 genomes]
rs6747855	0.81[EUR][1000 genomes]
rs7560061	0.87[EUR][1000 genomes]
rs7589699	0.86[EUR][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182918800-182937400	Weak transcription	Thymus	Thymus
2	chr2:182929400-182933000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:182929400-182942600	Weak transcription	Left Ventricle	heart
4	chr2:182929600-182942200	Weak transcription	Fetal Heart	heart
5	chr2:182930200-182932800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr2:182930200-182935200	Enhancers	Hela-S3	cervix
7	chr2:182930600-182934800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:182930800-182932400	Enhancers	NH-A	brain
9	chr2:182930800-182932800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr2:182930800-182934000	Enhancers	Osteobl	bone
11	chr2:182930800-182934200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:182930800-182934200	Enhancers	HUVEC	blood vessel
13	chr2:182931000-182932600	Enhancers	NHEK	skin
14	chr2:182931000-182933600	Enhancers	NHDF-Ad	bronchial
15	chr2:182931000-182933800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:182931000-182934000	Enhancers	Fetal Lung	lung
17	chr2:182931200-182932400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:182931200-182932400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr2:182931200-182932400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr2:182931200-182932400	Enhancers	HMEC	breast
21	chr2:182931200-182932400	Enhancers	HSMM	muscle
22	chr2:182931200-182934800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr2:182931200-182934800	Enhancers	NHLF	lung
24	chr2:182931400-182933200	Strong transcription	Fetal Thymus	thymus
25	chr2:182931600-182932400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr2:182931600-182932400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr2:182932200-182932400	Enhancers	Fetal Intestine Small	intestine
28	chr2:182932200-182932600	Enhancers	Duodenum Mucosa	Duodenum
29	chr2:182932200-182933000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr2:182932200-182933000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr2:182932200-182933000	Flanking Active TSS	Liver	Liver
32	chr2:182932200-182933200	Enhancers	Rectal Mucosa Donor 31	rectum

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