Variant report

Variant	rs11961836
Chromosome Location	chr6:11638055-11638056
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs484782	0.89[ASN][1000 genomes]
rs520928	0.94[ASN][1000 genomes]
rs821437	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763532	chr6:11634722-11641048	Enhancers Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11633200-11640200	Weak transcription	Aorta	Aorta
2	chr6:11636200-11639200	Enhancers	Pancreas	Pancrea
3	chr6:11636600-11638400	Enhancers	Stomach Mucosa	stomach
4	chr6:11637000-11638200	Enhancers	Osteobl	bone
5	chr6:11637000-11638600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:11637000-11639000	Weak transcription	Fetal Lung	lung
7	chr6:11637200-11638400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:11637200-11638800	Enhancers	HSMM	muscle
9	chr6:11637200-11640200	Weak transcription	Ovary	ovary
10	chr6:11637200-11640400	Weak transcription	Lung	lung
11	chr6:11637400-11638200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:11637400-11638200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:11637400-11638800	Enhancers	HSMMtube	muscle
14	chr6:11637400-11639000	Weak transcription	Fetal Stomach	stomach
15	chr6:11638000-11639000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:11638000-11641600	Weak transcription	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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