Variant report

Variant	rs11962346
Chromosome Location	chr6:120086200-120086201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11965268	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11967252	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11968410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11970586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1341487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1341502	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1935105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56827361	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57181464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59241522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59296586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59476622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59761384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59850213	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60765099	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61015038	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61533190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61550882	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1028580	chr6:120032073-120095538	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120085800-120086400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:120085800-120087400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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