Variant report

Variant	rs61533190
Chromosome Location	chr6:120049114-120049115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:120048345..120051007-chr6:120058358..120060686,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11962346	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11965268	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11967252	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11968410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11970586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1341487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1341502	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1935105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56827361	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57181464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59241522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59296586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59476622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59761384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59850213	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60765099	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61015038	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61550882	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6914520	0.84[ASN][1000 genomes]
rs9489780	0.81[ASN][1000 genomes]
rs9489782	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1027370	chr6:119869409-120056608	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv538431	chr6:119869409-120056608	Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1028580	chr6:120032073-120095538	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120048000-120049200	Enhancers	Fetal Thymus	thymus
2	chr6:120048000-120049400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:120048200-120049200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:120048200-120049400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:120048200-120049600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:120048200-120049600	Enhancers	Placenta	Placenta
7	chr6:120048200-120049800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:120048400-120049200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:120048400-120049400	Enhancers	H9 Cell Line	embryonic stem cell
10	chr6:120048400-120049400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:120048400-120049600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:120048600-120049400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr6:120048600-120049400	Weak transcription	Dnd41	blood
14	chr6:120048600-120049600	Flanking Active TSS	HepG2	liver
15	chr6:120048600-120049800	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr6:120048600-120049800	Enhancers	K562	blood
17	chr6:120048600-120050400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:120048600-120050400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:120048600-120050600	Enhancers	Primary hematopoietic stem cells	blood
20	chr6:120048800-120049200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:120048800-120049400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr6:120048800-120049800	Active TSS	Pancreas	Pancrea
23	chr6:120049000-120049200	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr6:120049000-120049600	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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