Variant report

Variant	rs1935105
Chromosome Location	chr6:119938108-119938109
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119932862..119934948-chr6:119935688..119940006,3	K562	blood:
2	chr6:119936573..119939342-chr6:119940727..119942239,2	K562	blood:
3	chr6:119929475..119932013-chr6:119937447..119940201,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11962346	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11965268	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11967252	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11968410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11970586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1341487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1341502	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56827361	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57181464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59241522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59296586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59476622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59761384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59850213	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60765099	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61015038	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61533190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61550882	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62419008	0.83[AFR][1000 genomes]
rs62419009	0.83[AFR][1000 genomes]
rs7773008	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1027370	chr6:119869409-120056608	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv538431	chr6:119869409-120056608	Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119930600-119948000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:119933200-119942000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:119934200-119942400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:119934400-119939600	Weak transcription	HSMMtube	muscle
5	chr6:119934600-119940600	Weak transcription	HMEC	breast
6	chr6:119934800-119942000	Weak transcription	Osteobl	bone
7	chr6:119935600-119940200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:119935600-119941000	Weak transcription	NHEK	skin
9	chr6:119935600-119942000	Weak transcription	NHLF	lung
10	chr6:119935800-119942200	Weak transcription	HSMM	muscle
11	chr6:119936000-119939200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:119936000-119942400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:119936000-119943600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr6:119936200-119943800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:119936800-119940200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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